Detailed information of SNP:



SNP ID: sf1207453898(Gbrowse)

Chromosome: chr12

Position: 7453898
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1383 67.10% 32.90%
All Indica767 44.46% 55.54%
All Japonica497 99.60% 0.40%
Aus64 75.00% 25.00%
Indica I356 53.93% 46.07%
Indica II204 38.24% 61.76%
Indica Intermediate207 34.30% 65.70%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 71.43% 28.57%
Intermediate41 82.93% 17.07%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1207453898 T->C INTERGENIC None