Detailed information of SNP:
|
SNP ID:
sf1207453898(Gbrowse)
Chromosome: chr12 Position: 7453898 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 67.10% | 32.90% |
| All Indica | 767 | 44.46% | 55.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 356 | 53.93% | 46.07% |
| Indica II | 204 | 38.24% | 61.76% |
| Indica Intermediate | 207 | 34.30% | 65.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207453898 | T->C | INTERGENIC | None |