Detailed information of SNP:



SNP ID: sf1207454241(Gbrowse)

Chromosome: chr12

Position: 7454241
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1398 60.59% 39.41%
All Indica782 34.14% 65.86%
All Japonica496 99.40% 0.60%
Aus65 70.77% 29.23%
Indica I364 40.93% 59.07%
Indica II212 30.66% 69.34%
Indica Intermediate206 25.73% 74.27%
Temperate Japonica334 99.40% 0.60%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 78.57% 21.43%
Intermediate41 73.17% 26.83%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1207454241 T->C INTERGENIC None