Detailed information of SNP:
|
SNP ID:
sf1207454241(Gbrowse)
Chromosome: chr12 Position: 7454241 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 60.59% | 39.41% |
| All Indica | 782 | 34.14% | 65.86% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 364 | 40.93% | 59.07% |
| Indica II | 212 | 30.66% | 69.34% |
| Indica Intermediate | 206 | 25.73% | 74.27% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207454241 | T->C | INTERGENIC | None |