Detailed information of SNP:
|
SNP ID:
sf1207454897(Gbrowse)
Chromosome: chr12 Position: 7454897 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 61.46% | 38.54% |
| All Indica | 783 | 35.38% | 64.62% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 369 | 42.28% | 57.72% |
| Indica II | 208 | 31.25% | 68.75% |
| Indica Intermediate | 206 | 27.18% | 72.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207454897 | C->A | INTERGENIC | None |