Detailed information of SNP:
|
SNP ID:
sf1207456592(Gbrowse)
Chromosome: chr12 Position: 7456592 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1305 | 89.66% | 10.34% |
| All Indica | 687 | 80.49% | 19.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 299 | 78.60% | 21.40% |
| Indica II | 196 | 81.12% | 18.88% |
| Indica Intermediate | 192 | 82.81% | 17.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207456592 | C->T | INTERGENIC | None |