Detailed information of SNP:
|
SNP ID:
sf1207489521(Gbrowse)
Chromosome: chr12 Position: 7489521 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.38% | 7.62% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207489521 | G->A | INTERGENIC | None |