Detailed information of SNP:
|
SNP ID:
sf1207492458(Gbrowse)
Chromosome: chr12 Position: 7492458 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 94.35% | 5.65% |
| All Indica | 780 | 91.03% | 8.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 363 | 83.75% | 16.25% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207492458 | T->G | INTERGENIC | None |