Detailed information of SNP:
|
SNP ID:
sf1207507640(Gbrowse)
Chromosome: chr12 Position: 7507640 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 50.47% | 49.53% |
| All Indica | 766 | 76.37% | 23.63% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 360 | 71.94% | 28.06% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 197 | 65.48% | 34.52% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207507640 | T->C | INTERGENIC | None |