Detailed information of SNP:
|
SNP ID:
sf1207508302(Gbrowse)
Chromosome: chr12 Position: 7508302 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 50.32% | 49.68% |
| All Indica | 799 | 24.78% | 75.22% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 61 | 13.11% | 86.89% |
| Indica I | 375 | 29.07% | 70.93% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207508302 | G->C | INTERGENIC | None |