Detailed information of SNP:
|
SNP ID:
sf1207508780(Gbrowse)
Chromosome: chr12 Position: 7508780 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 50.89% | 49.11% |
| All Indica | 791 | 23.39% | 76.61% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 372 | 17.20% | 82.80% |
| Indica II | 210 | 40.48% | 59.52% |
| Indica Intermediate | 209 | 17.22% | 82.78% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207508780 | A->T | INTERGENIC | None |