Detailed information of SNP:
|
SNP ID:
sf1207537391(Gbrowse)
Chromosome: chr12 Position: 7537391 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 23.90% | 76.10% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 29.07% | 70.93% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207537391 | T->A | LOC_Os12g13450(LOC_Os12g13450.1) | SNPs that introduce stop codons |