Detailed information of SNP:
|
SNP ID:
sf1207554314(Gbrowse)
Chromosome: chr12 Position: 7554314 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.90% | 45.10% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207554314 | T->C | INTERGENIC | None |