Detailed information of SNP:
|
SNP ID:
sf1207567705(Gbrowse)
Chromosome: chr12 Position: 7567705 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 66.31% | 33.69% |
| All Indica | 794 | 91.18% | 8.82% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 85.14% | 14.86% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207567705 | A->G | INTERGENIC | None |