Detailed information of SNP:
|
SNP ID:
sf1207570832(Gbrowse)
Chromosome: chr12 Position: 7570832 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.73% | 42.27% |
| All Indica | 797 | 88.46% | 11.54% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207570832 | T->C | INTERGENIC | None |