Detailed information of SNP:
|
SNP ID:
sf1207571327(Gbrowse)
Chromosome: chr12 Position: 7571327 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 95.78% | 4.22% |
| All Indica | 777 | 92.54% | 7.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 94.81% | 5.19% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 198 | 82.83% | 17.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207571327 | T->A | INTERGENIC | None |