Detailed information of SNP:
|
SNP ID:
sf1207584268(Gbrowse)
Chromosome: chr12 Position: 7584268 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 59.99% | 40.01% |
| All Indica | 777 | 93.31% | 6.69% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 354 | 90.68% | 9.32% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207584268 | G->C | INTERGENIC | None |