Detailed information of SNP:
|
SNP ID:
sf1207605818(Gbrowse)
Chromosome: chr12 Position: 7605818 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.92% | 20.08% |
| All Indica | 799 | 72.34% | 27.66% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 53.33% | 46.67% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207605818 | G->A | INTERGENIC | None |