Detailed information of SNP:
|
SNP ID:
sf1207620464(Gbrowse)
Chromosome: chr12 Position: 7620464 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 73.94% | 26.06% |
| All Indica | 796 | 65.33% | 34.67% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 372 | 50.00% | 50.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207620464 | G->A | LOC_Os12g13580(LOC_Os12g13580.1) | INTRON |