Detailed information of SNP:
|
SNP ID:
sf1207620587(Gbrowse)
Chromosome: chr12 Position: 7620587 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 74.34% | 25.66% |
| All Indica | 744 | 54.84% | 45.16% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 66.95% | 33.05% |
| Indica II | 190 | 30.00% | 70.00% |
| Indica Intermediate | 200 | 57.00% | 43.00% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207620587 | G->T | LOC_Os12g13580(LOC_Os12g13580.1) | INTRON |