Detailed information of SNP:
|
SNP ID:
sf1207621429(Gbrowse)
Chromosome: chr12 Position: 7621429 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.05% | 25.95% |
| All Indica | 798 | 65.41% | 34.59% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207621429 | A->T | LOC_Os12g13580(LOC_Os12g13580.1) | INTRON |