Detailed information of SNP:
|
SNP ID:
sf1207665244(Gbrowse)
Chromosome: chr12 Position: 7665244 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 55.71% | 44.29% |
| All Indica | 793 | 59.14% | 40.86% |
| All Japonica | 496 | 59.48% | 40.52% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 43.70% | 56.30% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 209 | 55.98% | 44.02% |
| Temperate Japonica | 334 | 59.88% | 40.12% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207665244 | T->C | LOC_Os12g13640(LOC_Os12g13640.1) | INTRON |