Detailed information of SNP:
|
SNP ID:
sf1207666775(Gbrowse)
Chromosome: chr12 Position: 7666775 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.37% | 30.63% |
| All Indica | 797 | 48.18% | 51.82% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 56.57% | 43.43% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207666775 | G->T | LOC_Os12g13640(LOC_Os12g13640.1) | UTR_3_PRIME |