Detailed information of SNP:
|
SNP ID:
sf1207673454(Gbrowse)
Chromosome: chr12 Position: 7673454 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 91.37% | 8.63% |
| All Indica | 750 | 90.40% | 9.60% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 60 | 48.33% | 51.67% |
| Indica I | 332 | 87.35% | 12.65% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 10 | 10.00% | 90.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207673454 | G->A | LOC_Os12g13650(LOC_Os12g13650.1) | Non-Synonymous SNP |