Detailed information of SNP:
|
SNP ID:
sf1207696601(Gbrowse)
Chromosome: chr12 Position: 7696601 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.91% | 14.09% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 61.77% | 38.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207696601 | C->A | LOC_Os12g13670(LOC_Os12g13670.2) | UTR_5_PRIME |
| sf1207696601 | C->A | LOC_Os12g13670(LOC_Os12g13670.1) | UTR_5_PRIME |