Detailed information of SNP:
|
SNP ID:
sf1207701624(Gbrowse)
Chromosome: chr12 Position: 7701624 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 798 | 59.65% | 40.35% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207701624 | A->C | INTERGENIC | None |