Detailed information of SNP:
|
SNP ID:
sf1207706588(Gbrowse)
Chromosome: chr12 Position: 7706588 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.61% | 13.39% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207706588 | C->A | LOC_Os12g13674(LOC_Os12g13674.1) | UTR_5_PRIME |