Detailed information of SNP:
|
SNP ID:
sf1207717316(Gbrowse)
Chromosome: chr12 Position: 7717316 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 91.56% | 8.44% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 456 | 75.88% | 24.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 303 | 77.23% | 22.77% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 62 | 56.45% | 43.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207717316 | C->G | LOC_Os12g13690(LOC_Os12g13690.1) | Non-Synonymous SNP |