Detailed information of SNP:
|
SNP ID:
sf1207740230(Gbrowse)
Chromosome: chr12 Position: 7740230 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.18% | 23.82% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207740230 | A->T | LOC_Os12g13720(LOC_Os12g13720.1) | INTRON |
| sf1207740230 | A->T | LOC_Os12g13720(LOC_Os12g13720.2) | INTRON |