Detailed information of SNP:
|
SNP ID:
sf1207769828(Gbrowse)
Chromosome: chr12 Position: 7769828 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 56.89% | 43.11% |
| All Indica | 791 | 87.99% | 12.01% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207769828 | C->T | INTERGENIC | None |