Detailed information of SNP:
|
SNP ID:
sf1207770797(Gbrowse)
Chromosome: chr12 Position: 7770797 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 57.87% | 42.13% |
| All Indica | 781 | 91.42% | 8.58% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 363 | 94.21% | 5.79% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207770797 | G->A | INTERGENIC | None |