Detailed information of SNP:
|
SNP ID:
sf1207771663(Gbrowse)
Chromosome: chr12 Position: 7771663 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 89.43% | 10.57% |
| All Indica | 790 | 82.78% | 17.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 367 | 81.74% | 18.26% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207771663 | G->A | INTERGENIC | None |