Detailed information of SNP:
|
SNP ID:
sf1207779036(Gbrowse)
Chromosome: chr12 Position: 7779036 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1282 | 77.15% | 22.85% |
| All Indica | 679 | 59.79% | 40.21% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 55 | 85.45% | 14.55% |
| Indica I | 319 | 57.37% | 42.63% |
| Indica II | 184 | 61.96% | 38.04% |
| Indica Intermediate | 176 | 61.93% | 38.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207779036 | C->T | LOC_Os12g13770(LOC_Os12g13770.1) | Non-Synonymous SNP |