Detailed information of SNP:
|
SNP ID:
sf1207783112(Gbrowse)
Chromosome: chr12 Position: 7783112 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 53.52% | 46.48% |
| All Indica | 790 | 83.42% | 16.58% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 368 | 85.05% | 14.95% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207783112 | C->T | INTERGENIC | None |