Detailed information of SNP:
|
SNP ID:
sf1207784041(Gbrowse)
Chromosome: chr12 Position: 7784041 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 52.21% | 47.79% |
| All Indica | 783 | 25.29% | 74.71% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 364 | 25.82% | 74.18% |
| Indica II | 211 | 27.96% | 72.04% |
| Indica Intermediate | 208 | 21.63% | 78.37% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207784041 | A->G | INTERGENIC | None |