Detailed information of SNP:
|
SNP ID:
sf1207814361(Gbrowse)
Chromosome: chr12 Position: 7814361 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.17% | 38.83% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207814361 | T->G | INTERGENIC | None |