Detailed information of SNP:
|
SNP ID:
sf1207822005(Gbrowse)
Chromosome: chr12 Position: 7822005 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.89% | 39.11% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207822005 | C->A | LOC_Os12g13824(LOC_Os12g13824.2) | INTRON |
| sf1207822005 | C->A | LOC_Os12g13824(LOC_Os12g13824.1) | INTRON |