Detailed information of SNP:
|
SNP ID:
sf1207823153(Gbrowse)
Chromosome: chr12 Position: 7823153 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 61.16% | 38.84% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207823153 | G->A | INTERGENIC | None |