Detailed information of SNP:
|
SNP ID:
sf1207823173(Gbrowse)
Chromosome: chr12 Position: 7823173 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 51.38% | 48.62% |
| All Indica | 796 | 58.54% | 41.46% |
| All Japonica | 497 | 48.89% | 51.11% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207823173 | A->G | INTERGENIC | None |