Detailed information of SNP:
|
SNP ID:
sf1207825103(Gbrowse)
Chromosome: chr12 Position: 7825103 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.04% | 38.96% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207825103 | G->C | INTERGENIC | None |