Detailed information of SNP:
|
SNP ID:
sf1207827941(Gbrowse)
Chromosome: chr12 Position: 7827941 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.96% | 39.04% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207827941 | C->T | INTERGENIC | None |