Detailed information of SNP:
|
SNP ID:
sf1207835712(Gbrowse)
Chromosome: chr12 Position: 7835712 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 56.12% | 43.88% |
| All Indica | 781 | 30.47% | 69.53% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 366 | 31.69% | 68.31% |
| Indica II | 209 | 29.67% | 70.33% |
| Indica Intermediate | 206 | 29.13% | 70.87% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207835712 | A->G | INTERGENIC | None |