Detailed information of SNP:
|
SNP ID:
sf1207836963(Gbrowse)
Chromosome: chr12 Position: 7836963 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 81.11% | 18.89% |
| All Indica | 728 | 68.68% | 31.32% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 333 | 75.38% | 24.62% |
| Indica II | 202 | 59.90% | 40.10% |
| Indica Intermediate | 193 | 66.32% | 33.68% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207836963 | G->T | INTERGENIC | None |