Detailed information of SNP:
|
SNP ID:
sf1207837483(Gbrowse)
Chromosome: chr12 Position: 7837483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 67.94% | 32.06% |
| All Indica | 735 | 48.44% | 51.56% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 56 | 41.07% | 58.93% |
| Indica I | 338 | 51.48% | 48.52% |
| Indica II | 206 | 45.15% | 54.85% |
| Indica Intermediate | 191 | 46.60% | 53.40% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207837483 | C->T | INTERGENIC | None |