Detailed information of SNP:
|
SNP ID:
sf1207837492(Gbrowse)
Chromosome: chr12 Position: 7837492 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 52.39% | 47.61% |
| All Indica | 782 | 25.06% | 74.94% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 369 | 18.97% | 81.03% |
| Indica II | 207 | 29.95% | 70.05% |
| Indica Intermediate | 206 | 31.07% | 68.93% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207837492 | T->C | INTERGENIC | None |