Detailed information of SNP:
|
SNP ID:
sf1207837866(Gbrowse)
Chromosome: chr12 Position: 7837866 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 72.43% | 27.57% |
| All Indica | 736 | 56.93% | 43.07% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 59 | 37.29% | 62.71% |
| Indica I | 342 | 61.40% | 38.60% |
| Indica II | 206 | 50.00% | 50.00% |
| Indica Intermediate | 188 | 56.38% | 43.62% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207837866 | A->G | INTERGENIC | None |