Detailed information of SNP:
|
SNP ID:
sf1207847000(Gbrowse)
Chromosome: chr12 Position: 7847000 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.16% | 38.84% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207847000 | C->A | LOC_Os12g13860(LOC_Os12g13860.1) | SNPs that introduce stop codons |