Detailed information of SNP:
|
SNP ID:
sf1207861061(Gbrowse)
Chromosome: chr12 Position: 7861061 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 93.23% | 6.77% |
| All Indica | 787 | 88.82% | 11.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 365 | 86.30% | 13.70% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207861061 | G->T | INTERGENIC | None |