Detailed information of SNP:
|
SNP ID:
sf1207871283(Gbrowse)
Chromosome: chr12 Position: 7871283 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 66.93% | 33.07% |
| All Indica | 795 | 44.15% | 55.85% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 55.88% | 44.12% |
| Indica II | 210 | 17.14% | 82.86% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207871283 | C->G | INTERGENIC | None |