Detailed information of SNP:
|
SNP ID:
sf1207872424(Gbrowse)
Chromosome: chr12 Position: 7872424 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 58.82% | 41.18% |
| All Indica | 792 | 91.67% | 8.33% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 91.91% | 8.09% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207872424 | C->T | LOC_Os12g13890(LOC_Os12g13890.1) | Non-Synonymous SNP |
| sf1207872424 | C->T | LOC_Os12g13890(LOC_Os12g13890.2) | Non-Synonymous SNP |