Detailed information of SNP:
|
SNP ID:
sf1207882012(Gbrowse)
Chromosome: chr12 Position: 7882012 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.57% | 38.43% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207882012 | A->C | INTERGENIC | None |