Detailed information of SNP:
|
SNP ID:
sf1207885816(Gbrowse)
Chromosome: chr12 Position: 7885816 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 96.38% | 3.62% |
| All Indica | 763 | 93.71% | 6.29% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 363 | 96.69% | 3.31% |
| Indica II | 199 | 87.44% | 12.56% |
| Indica Intermediate | 201 | 94.53% | 5.47% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207885816 | G->A | INTERGENIC | None |